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From Prediction to Personalised Treatment

Clinical Prediction Models and Machine Learning

The programme is divided into four course days, combining theoretical sessions with practical exercises.

Day 1: The development and quality of prediction models, including:

  • The characteristics of a prediction model
  • The most frequently used methods for selecting variables
  • The pros and cons of common methods for selecting variables
  • Sample size recommendations to develop a prediction model
  • Different measures of quality and how to interpret them (including explained variation, calibration, discrimination, ROC curve)
  • Introduction to Spline regression models.
  • Introduction R software

Day 2: Introduction to the validation of prediction models: 

  • The linear predictor (lp)
  • Optimism and shrinkage
  • Adjusting the intercept
  • The internal and external validation of prediction models
  • Train and test datasets (Bootstrapping and Cross-validation)
  • Adjusting the slope
  • External validation
  • Generalizability of prediction model (Case-mix, different regression coefficients)
  • Presentation formats of prediction models

Day 3: Updating of prediction models:

  • Reasons for generalizability problems
  • Updating the intercept and slope
  • Comparing Prediction models
  • Adding a new Updating of Prediction models variable
  • Reclassification tables
  • A prediction model for survival data

Day 4: Developing prediction model with many variables:

  • Developing prediction model with many variables
  • Cross-validation
  • Lasso Regression
  • Model stability analyses
  • Tree based methods
  • Random forest

Associate Professor: Martijn Heymans

Associate Professor: Martijn Heymans

Martijn Heymans studied Human Movement Sciences at VU Amsterdam and earned his PhD at the Faculty of Medicine with a cost-effectiveness analysis  in addition to a randomized controlled trial on the effectiveness of back schools in occupational health care. He then specialized in implementing and making accessible new methodological and biostatistical methods for applied researchers in epidemiological and medical research. With over 20 years of experience in higher education, he has served as coordinator, lecturer, examiner and supervisor in programmes such as Medicine, Biomedical Sciences, Health Sciences, ACTA, Physiotherapy and the MSc Epidemiology. He is currently Associate Professor at the Department of Epidemiology and Data Science at Amsterdam UMC, focusing on teaching methodology and biostatistics, statistical consulting, and PhD supervision.

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