De faculteit der Bètawetenschappen participeert in de volgende interdisciplinaire onderzoeksinstituten:
- Advanced Research Center for Nanolithography (ARCNL)
- Amsterdam Center for Business Analytics (ACBA)
- Amsterdam Center World Food Studies (ACWFS)
- Amsterdam Institute for Molecular and Life Sciences (AIMMS)
- Amsterdam Movement Sciences (AMS)
- Amsterdam Neuroscience (AN)
- Amsterdam Public Health (APH)
- Amsterdam Sustainability Institute (ASI)
- Institute for Lasers, Life and Biophotonics Amsterdam (LaserLaB)
- Interfaculty Research Institute for Culture, Cognition, History and Heritage (CLUE+)
- National Institute for Subatomic Physics (Nikhef)
- Netherlands Bioinformatics and Systems Biology research school (BioSB)
- Network Institute (NI)
- Research School for Socio- Eonomic and Natural Sciences of the Environment (SENSE)
- Sarphati Amsterdam
- TALMA